SNP Profiles matching SLA 16

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	AC	GG	CT	GG	AC	CC	AG	CC	GG	GG	AA	CC
1._PA_45_[PER]	_	_	AC	GG	CT	_	AC	-	AG	CC	_	_	AA	_
2._PA_45_[PER]	_	_	AC	GG	CT	_	AC	-	AG	CC	_	_	AA	_
3._RUQ_1081	_	_	AC	GT	CT	_	AC	CC	AG	CC	_	_	AA	_
4._RUQ_32	_	_	CC	GG	CC	_	AC	CC	AG	CC	_	_	AA	_
5._PA_137_[PER]	_	_	AC	GT	CT	_	AC	CC	AG	CC	_	_	AA	_
6._PA_72_[PER]	_	_	AC	GT	CC	_	AC	CC	AG	CC	_	_	AA	_
7._PA_56_[PER]	_	_	CC	GG	CC	_	AC	CC	AG	CC	_	_	AA	_
8._RUQ_32	TT	CC	CC	GG	CC	GG	AC	CC	AG	CC	GG	GG	AA	CC
9._PA_128_[PER]	_	_	AC	GG	CC	_	AC	-	AG	CC	_	_	AA	_
10._PA_137_[PER]	_	_	AC	GT	CT	_	AC	_	AG	CC	_	_	AA	_
11._PA_137_[PER]	_	_	AC	GT	CT	_	AC	_	AG	CC	_	_	AA	_
12._PA_137_[PER]	_	_	AC	GT	CT	_	AC	-	AG	CC	_	_	AA	_
13._PA_207_[PER]	_	_	AC	GT	CT	_	AA	-	AG	CC	_	_	AA	_
14._PA_72_[PER]	_	_	AC	GT	CC	_	AC	-	AG	CC	_	_	AA	_
15._PA_88_[PER]	_	_	AC	GG	_	_	AC	_	AA	CC	_	_	AA	_
16._RUQ_952	TT	CC	AC	GT	CT	GG	AA	CC	GG	CC	GG	GG	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AC	CT	GG	CG	CC	CT	TT	CC	GG	AA	TT	AA	GG
1._PA_45_[PER]	AA	CC	CT	GT	CG	AC	_	TT	_	-	_	_	_	GG
2._PA_45_[PER]	AA	CC	CT	GT	CG	AC	_	TT	_	-	_	_	_	GG
3._RUQ_1081	AG	AC	CT	GG	CG	CC	_	TT	_	GG	_	_	_	GG
4._RUQ_32	AA	AC	CT	GT	CG	CC	_	TT	_	GG	_	_	_	GG
5._PA_137_[PER]	AG	AC	CT	GG	CG	CC	_	TT	_	GG	_	_	_	GG
6._PA_72_[PER]	AA	AC	CT	GT	CG	CC	_	TT	_	GG	_	_	_	GG
7._PA_56_[PER]	AA	AC	CT	GT	CG	CC	_	TT	_	GG	_	_	_	GG
8._RUQ_32	AA	AC	CT	GT	CG	CC	TT	TT	CT	GG	AG	TT	AA	GG
9._PA_128_[PER]	AA	AA	CC	GT	CG	CC	_	TT	_	-	_	_	_	GG
10._PA_137_[PER]	AG	AC	CT	GG	CG	CC	_	TT	_	GG	_	_	_	GG
11._PA_137_[PER]	AG	AC	CT	GG	CG	CC	_	TT	_	GG	_	_	_	GG
12._PA_137_[PER]	AG	AC	CT	GG	CG	CC	_	TT	_	-	_	_	_	GG
13._PA_207_[PER]	AA	AC	TT	GG	CG	AC	_	TT	_	-	_	_	_	GG
14._PA_72_[PER]	AA	AC	CT	GT	CG	CC	_	TT	_	-	_	_	_	GG
15._PA_88_[PER]	AA	CC	CT	GG	GG	CC	_	TT	_	GG	_	_	_	GG
16._RUQ_952	AA	AA	CT	GG	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	AA	AG	CC	CC	GG	GG	TT	TT	CT	CC	CT	GG
1._PA_45_[PER]	CC	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	GG
2._PA_45_[PER]	CC	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	GG
3._RUQ_1081	_	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	CC
4._RUQ_32	_	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	CG
5._PA_137_[PER]	_	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	CC
6._PA_72_[PER]	_	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	GG
7._PA_56_[PER]	_	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	CG
8._RUQ_32	CC	CC	-	AG	CC	CC	GG	GG	TT	TT	CT	CC	CT	CG
9._PA_128_[PER]	CC	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	GG
10._PA_137_[PER]	_	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	CC
11._PA_137_[PER]	_	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	CC
12._PA_137_[PER]	CC	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	CC
13._PA_207_[PER]	CC	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	GG
14._PA_72_[PER]	CC	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	GG
15._PA_88_[PER]	_	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	GG
16._RUQ_952	CC	CC	-	AG	CC	CC	GG	GG	TT	TT	CC	CT	CT	GG

	43
_Input profile	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._PA_45_[PER]	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._PA_45_[PER]	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._RUQ_1081	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._RUQ_32	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._PA_137_[PER]	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._PA_72_[PER]	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._PA_56_[PER]	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._RUQ_32	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._PA_128_[PER]	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._PA_137_[PER]	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._PA_137_[PER]	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._PA_137_[PER]	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._PA_207_[PER]	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._PA_72_[PER]	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._PA_88_[PER]	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._RUQ_952	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: SLA_16 RUQ_1092

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._PA_45_[PER]

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A F528 T3

Dapeng Zhang, 2014

2._PA_45_[PER]

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 261

Dapeng Zhang, 2014

3._PA_137_[PER] RUQ_1081

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

4._PA_56_[PER] RUQ_32

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

5._PA_137_[PER]

91.7 %
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Plot 1 - Row 7 C0181 28

Dapeng Zhang, 2016

6._PA_72_[PER]

91.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 633

Dapeng Zhang, 2016

7._PA_56_[PER]

91.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 238

Dapeng Zhang, 2016

8._PA_56_[PER] RUQ_32

91.7 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

9._PA_128_[PER]

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A D272 T2

Dapeng Zhang, 2014

10._PA_137_[PER]

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A D274 T1

Dapeng Zhang, 2016

11._PA_137_[PER]

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D430

Dapeng Zhang, 2016

12._PA_137_[PER]

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A D274 T1

Dapeng Zhang, 2014

13._PA_207_[PER]

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 731

Dapeng Zhang, 2014

14._PA_72_[PER]

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 633

Dapeng Zhang, 2014

15._PA_88_[PER]

90.9 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D677

Dapeng Zhang, 2016

16._PA_289_[PER] RUQ_952

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP899	32	TcSNP998	33	TcSNP999	34	TcSNP1060	35	TcSNP1063
36	TcSNP1111	37	TcSNP1126	38	TcSNP1253	39	TcSNP1309	40	TcSNP1439
41	TcSNP1442	42	TcSNP1458	43	TcSNP1484